Transcriptome & Tumor Microenvironment Analysis Services

• Streamlined pipeline for fast & scalable analysis
• Customized reporting
• Interactive reports
• Publication-ready figures
• Improve data interpretation with support from MedGenome`s team of experts

Next generation sequencing enables gene expression analysis from normal and disease tissues with high-sensitivity. Profiling of coding and non-coding RNAs is important in revealing molecular mechanisms of development and disease. MedGenome has validated several options for gene expression profiling, accommodating a wide range of input from single-cell to thousands of cells and intact or degraded RNA due to the storage and isolation conditions.

High Quality - llumina Solution

• Illumina Truseq mRNA stranded
• Illumina TruSeq Stranded Total RNA

Low Input - Takara Solutions

• Takara SMART-Seq V4
• Takara SMART-Seq Stranded

Degraded Input - Illumina and Takara Solutions

• SMARTer Stranded Total RNA v2-Pico Input
• Illumina TruSeq Stranded Total RNA

• Support with experimental design and selection of appropriate library preparation kit dependent on analysis accounting for input and quality of sample
• Experienced in processing a wide range of sample types with options for low input and degraded samples
• End-to-end solutions for extraction, sample QC, library preparation, sequencing and bioinformatics analysis
• Advanced analysis offering includes custom visuals and publication ready figures for improved data interpretation

BioFX’s transcriptome analysis platform was built using state-of-the-art analysis tools for gene expression, differential expression, pathway enrichment, splicing and fusion analysis and more.

• Detailed RNA Specific QC Figures
• Differential Gene Expression & Heatmap Visualization
• Pathway Enrichment Analysis
• Gene Fusion & Splicing Event Analysis
• OncoPeptTUME - Proprietary tumor microenvironment analysis

Ordering and Data Delivery
MedGenome’s customer portal allows for easy sample submission and sample tracking during lab processing. Data QC, raw data and interactive analysis reports are delivered securely through customer portal.