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NextGENe - Next Generation Sequencing Software
NextGENe software is the perfect analytical partner for the analysis of desktop sequencing data produced by Illumina® iSeq, Miniseq, MiSeq, NextSeq, HiSeq, and NovaSeq systems, Ion Torrent Ion GeneStudio S5, PGM, and Proton systems as well as other platforms. NextGENe software runs on a Windows® Operating System, which provides a biologist-friendly ‘point & click’ interface. It does not require scripting or other bioinformatics support, which are often required when using programs such as CLC Genomics Workbench, Lasergene`s SeqMan Pro, as well as academic software such as MAQ & SOAP, Top Hat, BWA & Bowtie.
NextGENe software employs unique platform-specific technologies in one free-standing multi-application package. NextGENe software contains analysis modules for:
- SNP/Indel detection
- Germline
- Somatic
- Exome Capture, Whole Exome Sequencing (WES)
- Whole Genome Sequencing (WGS)
- Structural Variant Analysis (including fusion gene detection)
- Family-based and Trio comparisons
- Tumor-normal comparisons
- Copy Number Variation (CNV) detection and alternative to MLPA-like screening
- de novo assembly
- Transcriptome; Alternative Splicing Analysis & Transcript Expression levels
- ChIP-Seq, Digital Gene Expression (DGE), miRNA Analysis & Quantification & Metagenomicss
NextGENe software is designed in a biologist friendly Windows® environment significantly reducing the need for additional bioinformatics resources and costs. NextGENe software utilizes low cost 64-bit Windows OS based hardware. (Click here for suggested hardware configuration)
- SNP/Indel Detection of NGS Reads
- Whole Genome Alignment
- SNP & Indel Discovery with Ion Torrent Data
- Targeted Resequencing
- Structural Variations (Gene Fusions)
- NEBNext Direct Analysis using Unique Molecular Identifiers (UMIs)
- Fluidigm Advanta Solid Tumor and RNA Fusion Panels
- Copy Number Variation (CNV) Analysis
- Copy Number Variation Tool
- NGS Replacement for MLPA® with Batch CNV Tool
- Sensitive Aneuploidy Detection (SAD™) Tool